Indonesia has a huge and diverse education system. Since the 21^st century，with the concerted efforts of various departments，Indonesia’s education of various levels（including pre-school，basic education，secondary education and higher education）have achieved great achievements，but there are still exist many problems that cannot be ignored. After Joko Widodo come into power，China and Indonesia has carried out fruitful Education cooperation，such as the establishment and regular holding of high-level mechanism of people-to-people exchange between China and Indonesia，China’s integration of China-Indonesia higher education cooperation into the national strategic plan，China and Indonesia have achieved fruitful results in higher education cooperation，and China and Indonesia have continuously explored new paths in vocational education. However，there are still exist many problems in China-Indonesia education cooperation，such as limited areas of education cooperation，lack of non-official track of education cooperation，assimilation of the identity of Indonesia Chinese，declining of the Chinese language and barrier of language communication，less of enthusiasm for education cooperation，and problems in Confucius Institutes. In order to solve these problems，we can start from the following aspects：improving top-level design from the overall thinking，perfecting multi-level education mechanism of exchange，adhering to the combination of “going out” and “bringing in”，changing the mode of education cooperation，implementing multi-track people-to-people Exchange mechanism，paying more attention to unofficial track exchange，and optimizing the functions of the Confucius Institute.